This page displays information for the following method:

Name:

ComBat

Description:

Linear mixed effect model

GitHub:

jtleek/sva-devel, theislab/scanpy

DOI:

10.1093/biostatistics/kxj037

Labels required?:

No

1 Overall

1.1 Plot

1.2 Table

2 Individual metrics

2.1 Overall

2.2 Batch correction

Batch correction

PCR batch

Batch ASW

Graph iLISI

Graph connectivity

kBET

2.3 Bio conservation

Bio conservation

NMI cluster/label

ARI cluster/label

Label ASW

Isolated label F1

Isolated label silhouette

Graph cLISI

HVG conservation

Cell cycle conservation

Trajectory conservation

3 Embeddings

Dataset (Output)

simulations_1_1 (Features)

Input features (Scaling)

Full (Scaled)

Full (Unscaled)

HVG (Scaled)

HVG (Unscaled)

mouse_brain (Features)

Input features (Scaling)

HVG (Scaled)

HVG (Unscaled)

pancreas (Features)

Input features (Scaling)

Full (Scaled)

Full (Unscaled)

HVG (Scaled)

HVG (Unscaled)

immune_cell_hum (Features)

Input features (Scaling)

Full (Scaled)

Full (Unscaled)

HVG (Scaled)

HVG (Unscaled)

lung_atlas (Features)

Input features (Scaling)

Full (Scaled)

Full (Unscaled)

HVG (Scaled)

HVG (Unscaled)

immune_cell_hum_mou (Features)

Input features (Scaling)

Full (Scaled)

Full (Unscaled)

HVG (Scaled)

HVG (Unscaled)

simulations_2 (Features)

Input features (Scaling)

Full (Scaled)

Full (Unscaled)

HVG (Scaled)

HVG (Unscaled)

4 Scalability

4.1 Time

4.2 Memory