Method: SAUCIE
This page displays information for the following method:
Name: |
SAUCIE |
Description: |
Sparse regularizes autoencoder |
GitHub: |
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DOI: |
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Labels required?: |
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1 Overall
1.1 Plot
1.2 Table
2 Individual metrics
2.1 Overall
2.2 Batch correction
Batch correction
PCR batch
Batch ASW
Graph iLISI
Graph connectivity
kBET
2.3 Bio conservation
Bio conservation
NMI cluster/label
ARI cluster/label
Label ASW
Isolated label F1
Isolated label silhouette
Graph cLISI
HVG conservation
Cell cycle conservation
Trajectory conservation
3 Embeddings
Dataset (Output)
simulations_1_1 (Embedding)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
simulations_1_1 (Features)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
immune_cell_hum (Embedding)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
immune_cell_hum (Features)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
mouse_brain (Embedding)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
pancreas (Features)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
pancreas (Embedding)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
mouse_brain (Features)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
lung_atlas (Embedding)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
lung_atlas (Features)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
simulations_2 (Features)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
simulations_2 (Embedding)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
immune_cell_hum_mou (Embedding)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
immune_cell_hum_mou (Features)
Input features (Scaling)
Full (Scaled)
Full (Unscaled)
HVG (Scaled)
HVG (Unscaled)
4 Scalability
4.1 Time
4.2 Memory
